HsaEX6063982 @ hg19
Exon Skipping
Gene
ENSG00000165661 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:30249]
Coordinates
chr9:139103110-139108568:-
Coord C1 exon
chr9:139108446-139108568
Coord A exon
chr9:139107000-139107150
Coord C2 exon
chr9:139103110-139103298
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTGTTTTTCAGATT
3' ss Score
11.41
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTGTTCCCTGGACGGCCGCCAGTCAAGAAGCTGTTGGAGATGCTGCAGGAGTGGCTGGCCAGCCTTCCCCTGGACAGGATCCCCTACAACGCCGTGCTTGACCTGGTCAACAACAAGATGCGG
Seq A exon
ATTTCTGGAATATTCCTTACTAATCACATAAAGTGGGTTGGATGTCAAGGAAGCCGATCTGAGTTGAGGGGTTACCCGTGTTCTCTCTGGAAACTGTTCCACACTTTGACTGTTGAAGCCTCGACCCACCCAGATGCACTGGTTGGCACAG
Seq C2 exon
GCTTTGAAGACGACCCCCAGGCTGTGCTGCAGACAATGAGGAGGTACGTTCACACCTTCTTTGGGTGTAAGGAATGTGGTGAGCACTTTGAGGAAATGGCTAAAGAATCCATGGACTCGGTGAAAACCCCAGACCAAGCCATCCTCTGGCTGTGGAAGAAGCATAATATGGTGAACGGCCGCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.063
Domain overlap (PFAM):
C1:
NO
A:
PF047778=Evr1_Alr=PU(23.3=47.1)
C2:
PF047778=Evr1_Alr=FE(61.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTCAAGAAGCTGTTGGA
R:
ATGGCTTGGTCTGGGGTTTTC
Band lengths:
248-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)