GgaEX0002092 @ galGal3
Exon Skipping
Gene
ENSGALG00000001758 | QSOX2
Description
NA
Coordinates
chr17:8722897-8727228:+
Coord C1 exon
chr17:8722897-8723019
Coord A exon
chr17:8724019-8724169
Coord C2 exon
chr17:8727040-8727228
Length
151 bp
Sequences
Splice sites
3' ss Seq
TAAATACGTATTCTTTTCAGATT
3' ss Score
8.24
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTTTTTCCTGGCCGTCAGCCTGTGGTGAAGTTGTTAGAGACCTTGCAGGAGTGGCTGGTGAGCCTTCCATTAGACAAAATCCCTTATGATGCTATTCTAGATCTGGTCAACAACAAAATGCGG
Seq A exon
ATTTCTGGGATATTTCTTACTAAGAGAACAGAGTGGGTTGGCTGTCAGGGCAGCAGGCCGGAGCTCAGAGGCTATACTTGTTCCCTTTGGAAGCTGTTTCATACCCTAACTGTGCAAGCTGCGCTGCGACCAACAGCTTTGATAAGTACAG
Seq C2 exon
GCCTTGAAGACAATCCCCGAATAGTACTTGAGGTCATGCGGAGATACATCCATCACTTCTTTGGATGCAAGGCTTGTGCTCAGCACTTTGAGGAGATGGCGAAGGAATCCATGGACTCGGTGCAAACCTTGGACAAGGCTGTTCTCTGGCTCTGGGAGAAACACAACGTAGTCAATAACAGACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF088066=Sep15_SelM=FE(72.7=100)
A:
PF047778=Evr1_Alr=PU(23.3=47.1)
C2:
PF047778=Evr1_Alr=FE(61.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGACCTTGCAGGAGTGGC
R:
TGTGTTTCTCCCAGAGCCAGA
Band lengths:
254-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]