DreEX0007203 @ danRer10
Exon Skipping
Gene
ENSDARG00000077174 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr5:63620646-63627057:+
Coord C1 exon
chr5:63620646-63620768
Coord A exon
chr5:63623945-63624095
Coord C2 exon
chr5:63626869-63627057
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTGTTTTATTCTCAGATC
3' ss Score
8.71
5' ss Seq
CCGGTATGA
5' ss Score
8.14
Exon sequences
Seq C1 exon
CTGTTTCCAGGCCACCAGTCGGTGGTGAAACTTTTGGAGACATTGCTGGAATGGCTAGTCAGTTTACCTTTGGAGAAGATCCCCTATGATGCCATCCTCGATCTAGTTAACAACAAGATGAGG
Seq A exon
ATCTCGGGACTGTACCTGAGTGAACAAGTGCAGTGGGTTGGATGCCAGGGTAGCAGTGTGGCACTAAGAGGATATCCATGCTCCCTCTGGACTCTCTTTCACGTTTTGACTGTGCAAGCTGCCAACCGGCCTGATGCTCTGGCCAACACCG
Seq C2 exon
GTTTTGAGGACGATCCCTTGGCAGTGCTTCAGACCATGCGTCGCTACATTGGGACCTTCTTTGGATGCCAGGAGTGTGGGAAGCATTTTGAGGAGATGGCACAGGAGTCTCTGAACCAGGTCAAGACTGTTGATGAGGCGGTGTTGTGGCTCTGGAGGAAACACAACCAGGTTAACGCAAGACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077174-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
PF047778=Evr1_Alr=PU(23.3=47.1)
C2:
PF047778=Evr1_Alr=FE(61.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGGTGGTGAAACTTTTGGA
R:
AACACCGCCTCATCAACAGTC
Band lengths:
252-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]