BtaEX6047270 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030384 | SURF1
Description
surfeit 1 [Source:HGNC Symbol;Acc:HGNC:11474]
Coordinates
chr11:104325122-104326548:-
Coord C1 exon
chr11:104326505-104326548
Coord A exon
chr11:104325954-104326140
Coord C2 exon
chr11:104325122-104325512
Length
187 bp
Sequences
Splice sites
3' ss Seq
TGTGGGGGTGTGTCCCGCAGGAA
3' ss Score
9.62
5' ss Seq
TCGGTACGT
5' ss Score
10.06
Exon sequences
Seq C1 exon
ACGATCGCCTACAGCATTTTATGGGACTTGAAGTTTCTGATGAG
Seq A exon
GAACCTGGCCCTGGGAGGAGGCTTGCTGCTGCTGCTGGCTGAGTCCCGATCCGAAGGCAAGAGCATGTTCGCGGGCGTCCCCACCATGCGTGAGAGCTCCCCCAAGCAGTACATGCAGCTCGGAGGCCGAGTCCTGCTGGTCCTGATGTTCATGACGCTGCTCCACTTTGACGCCAGCTTCTTCTCG
Seq C2 exon
TCCCGAGTTACTCCACCCTGGCGCGAGGCCCGCAGGGACGCGGGCAGCTGGAACCGGCCGGCACATCAAACAGGACACGTCTCTTCTTCACGTTCATTCTCATTCCATACCTTTCGACCTATGCAGATCCTCCAGAACATCGTGGGCACGGCTCTGATGATTTTGGTGGCCATCGGCTTTAAAACCAAGCTGGCCGCCTTGACTCTTGTCGTCTGGCTGTTTGCCATCAACGTGTACTTCAATGCCTTCTGGACCATTCCCGTCTATAAGCCCATGCACGACTTTCTCAAGTACGACTTCTTCCAGACCATGTCGGTGATCGGAGGCTTGCTCCTGGTGGTGGCCCTGGGCCCCGGGGGTGTGTCCATGGACGAGAAGAAGAAAGAATGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030384-'9-7,'9-5,10-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0207710=SURF4=FE(7.7=100)
A:
PF0207710=SURF4=FE(34.3=100)
C2:
PF0207710=SURF4=PD(1.1=1.5),PF0207710=SURF4=WD(100=75.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTACAGCATTTTATGGGACT
R:
CCAGACGACAAGAGTCAAGGC
Band lengths:
255-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]