DreEX0076573 @ danRer10
Exon Skipping
Gene
ENSDARG00000035131 | surf4l
Description
surfeit gene 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-172]
Coordinates
chr5:62947801-62957270:-
Coord C1 exon
chr5:62957227-62957270
Coord A exon
chr5:62952647-62952833
Coord C2 exon
chr5:62947801-62948561
Length
187 bp
Sequences
Splice sites
3' ss Seq
CGCTGGTCTCTGTGTTTCAGGAA
3' ss Score
10.93
5' ss Seq
TCGGTACGT
5' ss Score
10.06
Exon sequences
Seq C1 exon
ACTGTTGCCTACAGCATTCTTTGGGACCCAAAGTTTTTGATGAG
Seq A exon
GAACTTGGCTCTGGGTGGAGGTTTGCTGCTGCTGCTCGCCGAGTCTCGTTCTGAGGGCAGGAGTATGTTTGCTGGAGTTCCCACAATGAGAGAGAGCTCTCCGAAACAGTACATGCAGCTCGGTGGCAGAGTCCTACTGGTGCTCATGTTTATGACGCTGCTACACTTTGACACAAGCTTCCTCTCG
Seq C2 exon
ATCTTACAGAACCTTGTGGGCACAGCTCTCATCGTCCTGGTAGCGATCGGTTTCAAGACCAAACTGGCTGCCCTCACCCTGGTCATCTGGCTGCTGGCTATAAACGTCTACTTTAACGCCTTCTGGACCATTCCAGCATACAAACCCATGCACGACTTCCTCAAATACGACTTCTTCCAGACCACGTCAGTGATCGGAGGTCTTCTGCTGATCGTAGCGCTCGGTCCGGGTGGAGTGTCAATGGATGAGAAGAAGAAAGAGTGGTGAGACGGGACTCTCCTCAAAATGGCTCACTCAGTAGTTTGTTTGTTTTTTTTTCTGTGCAGTTATCACTCGAAGCAGGTACACTACTTAGGGAGGAAAGAGCCAATTGAGACGTGGCCTCACAAAATCAAAATCAAAAAACACCCCAGGACCAACAGATTGACCCGCTCCACTGTCCACATCTCATGCACTGTCTGTGTTTTCATCGTTGTGTGCTTACTGAATTTATTTTCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035131-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0207710=SURF4=FE(5.3=100)
A:
PF0207710=SURF4=FE(23.3=100)
C2:
PF0207710=SURF4=PD(32.7=97.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCATTCTTTGGGACCCAA
R:
CGCTACGATCAGCAGAAGACC
Band lengths:
253-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]