HsaEX0062973 @ hg19
Exon Skipping
Gene
ENSG00000148248 | SURF4
Description
surfeit 4 [Source:HGNC Symbol;Acc:11476]
Coordinates
chr9:136228325-136232904:-
Coord C1 exon
chr9:136232861-136232904
Coord A exon
chr9:136231716-136231902
Coord C2 exon
chr9:136228325-136230635
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCCACATATCTGTTCCTCAGGAA
3' ss Score
8.62
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ACGATTGCCTACAGCATTTTATGGGACTTGAAGTTTTTGATGAG
Seq A exon
GAACCTGGCCCTGGGAGGAGGCCTGTTGCTGCTCCTAGCAGAATCCCGTTCTGAAGGGAAGAGCATGTTTGCGGGCGTCCCCACCATGCGTGAGAGCTCCCCCAAACAGTACATGCAGCTCGGAGGCAGGGTCTTGCTGGTTCTGATGTTCATGACCCTCCTTCACTTTGACGCCAGCTTCTTTTCT
Seq C2 exon
ATTGTCCAGAACATCGTGGGCACAGCTCTGATGATTTTAGTGGCCATTGGTTTTAAAACCAAGCTGGCTGCTTTGACTCTTGTTGTGTGGCTCTTTGCCATCAACGTATATTTCAACGCCTTCTGGACCATTCCAGTCTACAAGCCCATGCATGACTTCCTGAAATACGACTTCTTCCAGACCATGTCGGTGATTGGGGGCTTGCTCCTGGTGGTGGCCCTGGGCCCTGGGGGTGTCTCCATGGATGAGAAGAAGAAGGAGTGGTAACAGTCACAGATCCCTACCTGCCTGGCTAAGACCCGTGGCCGTCAAGGACTGGTTCGGGGTGGATTCAACAAAACTGCCAGCTTTTATGTATCCTCTTCCCTTCCCCTCCCTTGGTAAAGGCACAGATGTTTTGAGAACTTTATTTGCAGAGACACCTGAGAATCGATGGCTCAGTCTGCTCTGGAGCCACAGTCTGGCGTCTGACCCTTCAGTGCAGGCCAGCCTGGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148248-'6-9,'6-7,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0207710=SURF4=FE(11.7=100)
A:
PF0207710=SURF4=FE(34.6=100)
C2:
PF0207710=SURF4=PD(32.7=97.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACAGCATTTTATGGGACT
R:
CAAGCCCCCAATCACCGAC
Band lengths:
242-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)