GgaEX1056542 @ galGal4
Exon Skipping
Gene
ENSGALG00000028265 | SURF4
Description
Surfeit locus protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q800K9]
Coordinates
chr17:6878957-6889748:-
Coord C1 exon
chr17:6889583-6889748
Coord A exon
chr17:6879703-6879889
Coord C2 exon
chr17:6878957-6879401
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCACTTGTATCTTTCTGTAGGAA
3' ss Score
10.44
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
CGGTGCGGCGCGGCTCGGCGCTCCCCCTCCTCTCTTTCCTTCTTCCTTCCCTGCGGCCGCAGCCCCTCAGCGCAAGGCCGGGCCCGAGGCGCGCAGCAGCGCTTCTTTCTCCGCTGCTATGGGTCAGAACGATATCATGAGCACCGCTGAGGACTTCGCGGATCAG
Seq A exon
GAACCTTGCCCTGGGGGGAGGCTTGCTACTACTTTTGGCTGAGTCACGCTCAGAGGGGAAGAGCATGTTTGCTGGTGTCCCTACTATGCGGGAGAGCTCTCCTAAGCAGTACATGCAGCTTGGGGGCCGTGTGCTGCTGGTCCTCATGTTCATGACACTGCTGCATTTTGATATGAACTTCTTTTAT
Seq C2 exon
ATTCTGCAAAACATTGTAGGCACAGCCCTGATTATCTTGGTGGCAATTGGCTTCAAGACGAAGCTGGCTGCCTTGACTCTAGTCATCTGGCTGTTTGGCATCAACATCTACTTCAATGCCTTCTGGACCATCCCAGCCTACAAGCCCATGCACGACTTCCTCAAATATGATTTCTTCCAGACCATGTCTGTAATTGGAGGGCTCCTCCTTGTGGTTGCACTGGGTCCTGGTGGAGTCTCCATGGATGAGAAGAAGAAAGAGTGGTAACAGGAGTAGCAACACTTCCTGGGACATAACATGTTAAGATCAGAACTGATTCTGTATGGATTCAACAAAAACTGCCAGCATTTTACACATACATGCCCCCTTCTTATTAAAGGCACAGATGTTTTGAATTTGATTTACAGTGGCACCAGTAATATAATAGATAAAATCCCGTTTCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028265_MULTIEX1-4/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0207710=SURF4=PU(4.5=75.0)
A:
PF0207710=SURF4=FE(23.3=100)
C2:
PF0207710=SURF4=PD(32.7=97.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCATGAGCACCGCTGAGGA
R:
CAGTGCAACCACAAGGAGGAG
Band lengths:
256-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]