GgaEX1056542 @ galGal3
Exon Skipping
Gene
ENSGALG00000003178 | SURF4_CHICK
Description
NA
Coordinates
chr17:7544120-7547472:-
Coord C1 exon
chr17:7547429-7547472
Coord A exon
chr17:7546272-7546458
Coord C2 exon
chr17:7544120-7545970
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCACTTGTATCTTTCTGTAGGAA
3' ss Score
10.44
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
ACTATTGCATACAGCATTCTATGGGACCTGAAGTTCTTGATGAG
Seq A exon
GAACCTTGCCCTGGGGGGAGGCTTGCTACTACTTTTGGCTGAGTCACGCTCAGAGGGGAAGAGCATGTTTGCTGGTGTCCCTACTATGCGGGAGAGCTCTCCTAAGCAGTACATGCAGCTTGGGGGCCGTGTGCTGCTGGTCCTCATGTTCATGACACTGCTGCATTTTGATATGAACTTCTTTTAT
Seq C2 exon
ATTCTGCAAAACATTGTAGGCACAGCCCTGATTATCTTGGTGGCAATTGGCTTCAAGACGAAGCTGGCTGCCTTGACTCTAGTCATCTGGCTGTTTGGCATCAACATCTACTTCAATGCCTTCTGGACCATCCCAGCCTACAAGCCCATGCACGACTTCCTCAAATATGATTTCTTCCAGACCATGTCTGTAATTGGAGGGCTCCTCCTTGTGGTTGCACTGGGTCCTGGTGGAGTCTCCATGGATGAGAAGAAGAAAGAGTGGTAACAGGAGTAGCAACACTTCCTGGGACATAACATGTTAAGATCAGAACTGATTCTGTATGGATTCAACAAAAACTGCCAGCATTTTACACATACATGCCCCCTTCTTATTAAAGGCACAGATGTTTTGAATTTGATTTACAGTGGCACCAGTAATATAATAGATAAAATCCCGTTTCTTCAAGGAATGTTGCCTAGGCTTATCATTCTAACTTTCTAGATTTGGAACTAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003178-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
86%=100=67%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0207710=SURF4=FE(5.3=100)
A:
PF0207710=SURF4=FE(23.3=100)
C2:
PF0207710=SURF4=PD(32.7=97.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCATTCTATGGGACCTGA
R:
CAGTGCAACCACAAGGAGGAG
Band lengths:
256-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]