RnoEX0087754 @ rn6
Exon Skipping
Gene
ENSRNOG00000060005 | Surf4
Description
surfeit 4 [Source:RGD Symbol;Acc:1561980]
Coordinates
chr3:5470112-5474826:-
Coord C1 exon
chr3:5474640-5474826
Coord A exon
chr3:5472442-5472628
Coord C2 exon
chr3:5470112-5470374
Length
187 bp
Sequences
Splice sites
3' ss Seq
CTGATGTTTCTGTTCCTCAGGAA
3' ss Score
9.8
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
TTCCTTCGAGTCACCAAGCAGTACCTGCCTCATGTGGCACGCCTCTGCCTGATTAGCACCTTCCTGGAAGATGGCATCCGCATGTGGTTCCAGTGGAGTGAGCAGCGCGACTATATTGATACCACCTGGAGCTGTGGTTACCTGCTGGCCTCATCCTTCGTGTTCCTCAACCTGCTGGGACAGTTGA
Seq A exon
GAACCTGGCTTTAGGAGGAGGTTTGCTGCTGCTCTTGGCAGAGTCTCGCTCAGAAGGGAAGAGCATGTTTGCTGGTGTCCCCACCATGCGTGAGAGCTCCCCCAAGCAGTACATGCAGCTTGGAGGAAGGGTCCTGCTGGTCCTGATGTTCATGACCCTCCTTCACTTTGATGCCAGCTTTTTTTCT
Seq C2 exon
ATCATCCAGAACATTGTGGGCACAGCTCTGATGATCTTAGTAGCCATTGGTTTTAAAACCAAGCTGGCAGCTTTGACTCTCGTCGTCTGGCTGTTTGCCATCAACGTGTACTTCAACGCCTTCTGGACAATCCCGGTCTATAAGCCCATGCATGACTTCCTGAAATATGACTTCTTCCAGACCATGTCAGTGATTGGAGGCCTGCTCCTAGTGGTGGCTCTTGGCCCAGGGGGTGTCTCCATGGATGAGAAGAAGAAAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060005_MULTIEX2-3/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0207710=SURF4=FE(32.1=100)
A:
PF0207710=SURF4=FE(32.1=100)
C2:
PF0207710=SURF4=WD(100=100.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCTCATCCTTCGTGTTC
R:
GGCCTCCAATCACTGACATGG
Band lengths:
245-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]