BtaEX6047306 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104404661-104407288:+
Coord C1 exon
chr11:104404661-104404837
Coord A exon
chr11:104406357-104406541
Coord C2 exon
chr11:104407133-104407288
Length
185 bp
Sequences
Splice sites
3' ss Seq
CCACCTGCTCTCCCCTGCAGGAT
3' ss Score
12.9
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
GGGAGATGCTGCTGCTTTGGGGCAGGCTCGTGTGGAGGAAGATGTGCGGGAAGCCGGCCGGCATGGTTTTCAGCTCCCAAGCCAACACGCTGCTGGTGAGGCAGCGTCTTGTGCGGCCCGGAGGCGGAGTGCTGCTGCGGTATTCAAGCCAGCCTGCCCTGGGAGCCTTCCACCGAG
Seq A exon
GATGTGACATGCAGCTCTTCGGACCCCGGGGCGAAATCTCGAGCCCATCGATGAGTCCAGATGGGAGGAACGTGGGGGGCTGTCGCATCTTCATCGACGTGGCCCCGTGGGCCCGGATTGCCATCCATGCCCTGACCGTGGACAGCGGCACCAGAGCCGAGGGAACTGATGCCAGTTACATCTTG
Seq C2 exon
ATCCGGGACATCCACAGCCTGAGGACAACAGCATTTCGTGGGCAGAAGACGCTCTACTGGGAGTCAGAGGGCAGCCAGGCAGAGATGGAGTTTAGCCAGGGCTTCCTGGAAGCACACGCCAGCCTTCGGGGCCAGTACTGGACCCTCCACACGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'32-39,'32-38,33-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGTGGAGGAAGATGTGC
R:
AAACTCCATCTCTGCCTGGCT
Band lengths:
244-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]