DreEX0011255 @ danRer10
Exon Skipping
Gene
ENSDARG00000076270 | adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:ZFIN;Acc:ZDB-GENE-070814-7]
Coordinates
chr8:45218927-45226713:-
Coord C1 exon
chr8:45226537-45226713
Coord A exon
chr8:45222499-45222680
Coord C2 exon
chr8:45218927-45219343
Length
182 bp
Sequences
Splice sites
3' ss Seq
GTGTGTCTTTTTCTTCACAGTGT
3' ss Score
10.45
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGGAGAATATAGCCCTGTATGACAGACTTGTCCTTATGCGTCTTTGTGAGAGGATGACTGGTAAAATGGTCAAATCACGAACAAATGTTCTTTTGGTACGCCAAAACCGTCTCACCTCTGGCAATGGAGTGGTACTATTTTATCAAAGTGTAAAGACGAATAAAGGCTACAATAGAG
Seq A exon
TGTGTGATGTTCAACTGTTTGCTCCTTCCGGACTTATTGAGAATCCGATCAAGAGTCCAGCCACTTACCCCTCTAACACCCAGAGCTGTCGTGTGTTCATTGATGCTCCTCCTGCTTTGAGAGTTCAAATCAGAGCACTTTCTGTTCTCAACAATACAGACACAAACTCAACATACATATTG
Seq C2 exon
ATTCGAGATGTGGATGCTTTAAAGACAACCATATTTAGAGGAACACAGCTCTTCCTGTGGAGATCTTCAGGAAGCAGGGCTGAAGTGGAATTTCATGGGGAGTATCAGCAAATCAAAGGAATGTTTAGAGCAGAGTATTTGCATATTAACCCTTCTGAAGAATAACTAGCGTACTTTGTATGCATGCTAGTTCAACACGAATTTGAAATTTAAAAATAAGTATAGTAGTTTAACTAGTTTAGCATAAAAGAATCTGAGGAGAAGCAGTCTGAAATGGTCTGTTGTTCTGTCATATAATTGATAAACAAAAAATCATACCAATTGCTTTTCTATATTTATTGTTATGTGTTTTTCACCTTTCTAAATTGACAATCATATGTGCCATGTCTTCTTCTAATTTAACACCACAACGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076270-'26-30,'26-29,27-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTGGCAATGGAGTGGTA
R:
AGCATGCATACAAAGTACGCT
Band lengths:
252-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]