MmuEX0003821 @ mm10
Exon Skipping
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:27006622-27009628:+
Coord C1 exon
chr2:27006622-27006798
Coord A exon
chr2:27008533-27008717
Coord C2 exon
chr2:27009256-27009628
Length
185 bp
Sequences
Splice sites
3' ss Seq
ATCATTGTTCTTGCCTGCAGAAT
3' ss Score
10.25
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGGAGCAACTGCTGCTCTGGGGTAGGTTCACATGGAGGAAGACATGCAGGAAGATGCCTGGCATGACTTTCAGCACCAAAACCAACACAGTGGTGGTGAAGCAGCATCGTGTGCTGCCAGGGGGTGGAGTGCTGCTACGGTACTGGAGTCAACCTGCCCCGGGGACCTTCTACAAAG
Seq A exon
AATGTGACAGGCAGCTCTTTGGACCTCGGGGTGAAATTGTGAGTCCCTCACTGAGCCCAGACGGGAGGAAGGCAGGGACCTGCAGGGTCTTCATCAGTGTGGCTCCACAGGCCCGCATTGCCATCCGCGCCCTGGCCAGTGATATGGGCACTGCTTCTGAGGGGACCAATGCCAACTATGTCTCG
Seq C2 exon
ATCAGGGACATCCACAGTCTGAGGACCACAACATTTTGGGGGCAGCAGGTGCTCTACTGGGAGTCCGAAGGCAGCGAGGCTGAACTGGAGTTTAGCCCTGGCTTCCTGGAGGCACATGCCAGTCTCCAGGGCGAGTATTGGACCATCTCACCTAGGACATCGGAACAGGACGACAGCCTGGCTCTGTCCTAGGTTTCTCTCCAACAGCCGGGGAGTATGCAACTTTAGCCTCTTTAGAAGTTCTAATGCCTGCTAGCCTTAGGGAACCTCTTTTAGTGACCTTTTCCAGGTGCAGAAGGGCTGGGACTGGGAGGTGGAGATCAGAAAAACAGTCCCAGCCCCCAGTGGTTAATAAAGGATACAGGATACCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-'32-39,'32-38,33-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACAGTGGTGGTGAAGCAG
R:
AGATGGTCCAATACTCGCCCT
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types