GgaEX6015331 @ galGal3
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
NA
Coordinates
chr17:7591636-7593226:+
Coord C1 exon
chr17:7591636-7591812
Coord A exon
chr17:7592149-7592333
Coord C2 exon
chr17:7592610-7593226
Length
185 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTGCTCCCTCTCAGATT
3' ss Score
10.89
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTGAGGTCGTGCTGTTTTCTGGACGAATGATGTGGCGGACGGGCTGCAGGAAGCTTACTTTGTCTCTGATAAATTCCAGAACAAATACATTGATTGTGAAACAGCGTGTTTTGCTGCCAGGAAATGGGGTCGTTCTTCAGTACAACAGCAGAAATGCAATCAAAAAATATTACCAAG
Seq A exon
ATTGTGACAAGCAACTGTTTGGTCCCCATGGTGAAATAGTGAACCCTACTCAATCACCTGGTCAAAACCAAGAAGTGGTGTGTCGGACCTTCATCAATGTGGCTCCTCAGCACCACATAGCTATTCGAGGCCTGTATGTTGACCTGAGCCATGAGAGCAACCAAACACACTTTAATTACATCCTG
Seq C2 exon
ATCCGTGATGTAAGCACCATGAAGACAATGGTGTTTCGTGGGAAACAACAATTCTTCTGGCAATCAACAGGAAGCCAAGCTGAAATTGAATTTCATGAAAACATTAAGGATCACCAAACCCGTTTCTGGGCTGAATATCATGCTGCTGAACCCAAATAAAAGGGATCAGGGCCACTATAGTGAGAAAGACTGTGTACCAGTTAATCACTGCTGCCTGTTCACTGCTTGATGTCGCACACATCATTTAACCTTTTTACAGCTACTTCTCCATCTACTGAGTAAGAGTTAACTGAGATCCCAGTGGAGTCAGTAAATACTTAGAACATTTATGCAACAGGCATGTAACCACCAAATATTTCACAAATAGTTTTAATGTGAATTTTCTACGTTAATCGGTGTTAATGCATCTTACTTGTCTGGAATTAGTGACTTGGACACTGAAGTCTCATGGGTGATTGGCCTGGTCAAATACTGGCGACAACTGGCTTTGCATGGGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.129 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(56.1=96.8)
C2:
PF0043115=CUB=PD(42.1=84.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCGTGCTGTTTTCTGGAC
R:
GGCTTCCTGTTGATTGCCAGA
Band lengths:
250-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]