RnoEX0015862 @ rn6
Exon Skipping
Gene
ENSRNOG00000005840 | Cacfd1
Description
calcium channel flower domain containing 1 [Source:RGD Symbol;Acc:1311501]
Coordinates
chr3:5555807-5558821:+
Coord C1 exon
chr3:5555807-5555895
Coord A exon
chr3:5557246-5557430
Coord C2 exon
chr3:5557975-5558821
Length
185 bp
Sequences
Splice sites
3' ss Seq
ACCCTTGTTTTTGCCTGCAGAAT
3' ss Score
11.29
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGTGGTGGTGAGGCAGCATCGTGTGCTGCCGGGAGGTGGAGTGCTGCTACTGTACCGGAGCCAACCTGCCCCAGGGACCTTCTACAAAG
Seq A exon
AATGTGACAGGCAGCTCTTTGGACCTCGGGGTGAAATCACGAGTCCCTCACTGAGCCCAGACGGGAGGAAGGCAGGAACCTGCAGGGTCTTTGTCAGTGTGGCCCCACAGGCCCGAATTGCCATCCGTGCCCTGGCCAGTGACATGGGCACTGCTTCTGAGGGGACCAGTGCCAACTATGTCTCG
Seq C2 exon
ATCAGGGATATCCACGGTCTGAAGACTACAACATTTTGGGGGCAGCAGGTGCTCTACTGGGAGTCCGAAGGCAGTGAGGCTGAACTGGAGTTTAGCCATGGCTTCCTGGAGGCGCATGCCAGTTTCCAGGGCCAGTATTGGACCATCCCACCGAGGACACCGGAACAGGTCAACAGCGTGGCTCTGTCCTAGATTTCTCTCCAACGGCCAGCTGGAAAGAGAGGCAGCCCTACTCCGGAAAGGGTGACCATCCCCGGACTATGCAACTCTAGCCTCTTGAGAGGTTCAAATGCCTGCCAGCCGAAGGGAACCGCTTTTAGTGACCTTTTCCAGGTGCAGAAGGGCGGGGACTGGGAGTTGGAGATCAGAAAAGCAATCCCAGTCCTCAGGGCTAATAAAGGATACAGGAAACCAGACTGGAGTTTTCCTCCCATAACTTGCTGCCCACAGCAAGCCTGGCTTGAAAGCTTATTTTACTGAAAGGCGTGGTTCCCTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005840_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102334=Cg6151-P=PU(6.4=17.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAGTGCTGCTACTGTA
R:
AATCTAGGACAGAGCCACGCT
Band lengths:
251-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]