GgaEX6015331 @ galGal4
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6923587-6925818:+
Coord C1 exon
chr17:6923587-6923763
Coord A exon
chr17:6924099-6924283
Coord C2 exon
chr17:6924560-6925818
Length
185 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTGCTCCCTCTCAGAAT
3' ss Score
10.19
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTGAGGTCGTGCTGTTTTCTGGACGAATGATGTGGCGGACGGGCTGCAGGAAGCTTACTTTGTCTCTGATAAATTCCAGAACAAATACATTGATTGTGAAACAGCGTGTTTTGCTGCCAGGAAATGGGGTCGTTCTTCAGTACAACAGCAGAAATGCAATCAAAAAATATTACCAAG
Seq A exon
AATGTGACAAGCAACTGTTTGGTCCCCATGGTGAAATAGTGAACCCTACTCAATCACCTGGTCAAAAACAAGAAGTGGTGTGTCGGACCTTCATCAATGTGGCTCCTCAGCACCACATAGCTATTCGAGGCCTGTATGTTGACCTGAGCCATGAGAGCAACCAAACACACTTTAATTACATCCTG
Seq C2 exon
ATCCGTGATGTAAGCACCATGAAGACAATGGTTTTTCGTGGGAAACAACAATTCTTCTGGCAATCAACAGGAAGCCAAGCTGAAATTGAATTTCATGAAAACATTAAGGATCACCAAACCCGTTTCTGGGCTGAATATCATGCTGCTGAACCCAAATAAAAGGGATCAGGGCCACTATAGTGAGAAAGACTGTGCACCAGTTAATCACTGCTGCCTGTTCACTGCTTGATGTTGCACACATCATTTAACCTTTTTACAGCTACTTCTCCATCTACTGAGTAAGAGTTAACTGAGATCCCAGTGGAGTCAGTAAATACTTAGAACATTTATGCAACAGGCATGTAACCACCAAATATTTCACAAATAGTTTTAATGTGAATTTTCTACGTTAATCGGTGTTAATGCATCTTACTTGTCTGGAATTAGTGACTTGGACACTGAAGTCTCATGGGTGATTGGCCTGGTCAAATACTGGCGACAACTGGCTTTGCATGGAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028-'34-37,'34-36,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.113 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCGTGCTGTTTTCTGGAC
R:
GGCTTCCTGTTGATTGCCAGA
Band lengths:
250-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]