BtaEX6047318 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104390080-104391263:+
Coord C1 exon
chr11:104390080-104390209
Coord A exon
chr11:104390667-104390815
Coord C2 exon
chr11:104391143-104391263
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTTGCTTCTCCCCAGGGA
3' ss Score
11.82
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GCCTGCGAGAAGACCCAGCTGGAGTTCATGTCTGAGCAGTGTGCGCAGACGGACAGCGAGCCCCTGCGCCTCTCCCCAGGGGGCAGCACCGCCTTCTACCGCTGGGGGACCGCAGAGCAGTACAGCGAAG
Seq A exon
GGAACGCCCTGTGCAGACACGTGTGCCGGGCCGTCGGCGAGAGTTTCATGGTGCGGCGTGGGGACCGTTTCCTGGACGGCACGCGCTGTGTGCCGGGCGACCCTCAGGAGGACGGGGCCCTGAGGCTGTGCGTGTCAGGCAGCTGCAGG
Seq C2 exon
ACGTTTGGCTGTGATGGCAGGATGGACTCCGGACAGGTGCGGGACGTGTGCCAGGTGTGCGGCGGGGACAACAGCACGTGCCAGCCACAGAGCGGCTCCTTCACGGCCGGAAGGGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'13-21,'13-19,14-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.024
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.0=2.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGAGAAGACCCAGCTG
R:
CCTTCCGGCCGTGAAGGAG
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]