MmuEX0003819 @ mm10
Exon Skipping
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26985423-26987109:+
Coord C1 exon
chr2:26985423-26985549
Coord A exon
chr2:26986526-26986674
Coord C2 exon
chr2:26986989-26987109
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTGCAACTCTGCCCTTTCAGGAG
3' ss Score
8.61
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GCTTGTGAGAAGACTCAGCTGGAGTTCATGTCCGAGCAGTGTGCCCAGACAGACAGACAACCACTGCAACTTTCCCAAGGCACTGCCTCCTTCTACCACTGGGATGCTGCTGTGCAGTATAGTCAAG
Seq A exon
GAGATACCCTGTGCAGACACATGTGCTGGGCTGTTGGAGAAAGCTTCATTGTCAGCCGTGGGGACAGGTTCCTAGATGGGACCCGTTGTGTGCCAAGTGGTCCTCAGGATGATGGGACCCTAAGCCTCTGTTTGTTGGGCAGCTGCAGG
Seq C2 exon
ACCTTTGGCTGTGATGGCAGGATGGACTCCCAGAAGGTTTGGGATGCGTGCCAGGTGTGTGGAGGAGACAACAGCACCTGCAGCTCACGGAATGGTTCTTTCACAGCTGGGAGAGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.0=2.3)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(10.5=31.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTGGAGTTCATGTCCGA
R:
GCTCTCCCAGCTGTGAAAGAA
Band lengths:
229-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types