RnoEX0006790 @ rn6
Exon Skipping
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5540603-5542412:+
Coord C1 exon
chr3:5540603-5540729
Coord A exon
chr3:5541790-5541938
Coord C2 exon
chr3:5542292-5542412
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTTGCCACTCTGCCTTCCAGGGG
3' ss Score
8.85
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GCTTGTGAGAAGACTCAGCTGGAGTTCATGTCAGAGCAGTGTGCCCAGACAGACAGACATCCACTGCAACTTTCCCAAGGCAGTGCCTCCTTCTACCACTGGGATGCTGCTGTGCAGTATAGTCAAG
Seq A exon
GGGATACTCTGTGCAGACACATGTGCTGGGCTGTTGGAGAAAGTTTCATTGTCAGCCGTGGGGACAGTTTCCTCGATGGGACCCGTTGTGTGCCAAATGGTCCTCGGGAGGATGGGACCGTGAGCCTCTGTTTGTTGGGTAGCTGCAGG
Seq C2 exon
ACCTTTGGCTGTGATGGCAAGATGGACTCCCAGCAGGTTTGGGATGCGTGCCAGGTGTGTGGAGGAGACAACAGCACCTGCACTTCCCAAAATGGCTCTTTCACAGCTGGGAGAGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780-'14-15,'14-14,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.0=2.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGTTCATGTCAGAGCA
R:
GCTCTCCCAGCTGTGAAAGAG
Band lengths:
226-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]