DreEX6051435 @ danRer10
Exon Skipping
Gene
ENSDARG00000076270 | adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:ZFIN;Acc:ZDB-GENE-070814-7]
Coordinates
chr8:45255465-45256069:-
Coord C1 exon
chr8:45255943-45256069
Coord A exon
chr8:45255711-45255859
Coord C2 exon
chr8:45255465-45255585
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTTAGCTCCCTTCCTTTCAGGTG
3' ss Score
11.46
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTTTGTGATTCAACTCAGCTTGAGTTCATGGCTCGTCAGTGCTCAGCCACAGACCAGCAGCCTCTGTCAGTATCTACAGACTCTAAGTCAATGTATACCTGGATCCCTGCTATAAGCTACAGCTCAG
Seq A exon
GTGACTCTCAGTGTAAACTGATGTGTCGTTCACGTGAGCAGGACTTCATGGTGAGTCGTGGGTCTCAGTTCATTGATGGGACGCGGTGTGAATCTGATAATCCCGTACCACATGGGTCAATCTCTGCATGTCTAAGTGGAAAATGCCAG
Seq C2 exon
CTGTTTGGCTGCGATGGAGCATTGCATTCTGGAAAGGTGGAAGATGTGTGTGGGGTGTGTGGAGGCAATGGCTCCACATGTCACTTAATTTCAAACACTTATTCAGGTGGAAAGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076270-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(3.9=4.7)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(8.9=26.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTGATTCAACTCAGCTTGA
R:
CTCCAGCCTTTCCACCTGAAT
Band lengths:
248-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]