GgaEX7009812 @ galGal4
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6913567-6915052:+
Coord C1 exon
chr17:6913567-6913693
Coord A exon
chr17:6913917-6914062
Coord C2 exon
chr17:6914932-6915052
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTCTGCCTCCTCCAGGGG
3' ss Score
10.15
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCCTGTCTGATGACCCAGCTTGACTTTATGGCTGAACAGTGTGCAGCAACAAATTTAAAGCCACTGTATCTCACTGTAGGAGTGCCATCCTTTTACACCTGGACTTCTGCTGTTGGCTTTGCCAAAG
Seq A exon
GGGACACGCAGTGCAAGCACATGTGCAGGACCATTGAGGATGAATTCATGGTAAGCCGTGAGGACAGTTTCATAGATGGAACCAGATGTGAGCCTGATAACTCTGAAGATGGGACTTTCCATCTGTGTGTAGCGGGAAGCTGCAGA
Seq C2 exon
GCATTCGGGTGTGATGGCCAGATGAACTCCAAGAGGGCAATGGACTCTTGCAAGGTCTGTGGGGGTGATAATACCACCTGTATGGAAGTGAGTGGATCTTACACAGAAGGAAAAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028-'15-18,'15-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.0=2.3)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(10.4=31.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCTGATGACCCAGCTTG
R:
AGCTTTTCCTTCTGTGTAAGATCCA
Band lengths:
243-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]