BtaEX6047322 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104385201-104386662:+
Coord C1 exon
chr11:104385201-104385347
Coord A exon
chr11:104385626-104385788
Coord C2 exon
chr11:104386558-104386662
Length
163 bp
Sequences
Splice sites
3' ss Seq
GAACCGCGGCCTTGTCGCAGCGC
3' ss Score
4.31
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTTCGGCCTGGAGCACGATGGCGTGCCGGGCAGCGGCTGCGGGCCCAGCGGCCACGTGATGGCCTCGGACGGCGCGGCGCCCGCCCTCGCCCTCGGGGGCCCGGCGTGGTCCCCCTGCAGCCGCCGGCAGCTGCTGAGTCTGCTCAG
Seq A exon
CGCAGGACGGGCGCGCTGCTTGTGGGACCCTCCGGGGCCGCTGTCCGGGCCCGCGGGGCAGCCTCCCGAGGTGCAGCCCGGCCTCTACTACGGCGCAGACGAGCAGTGCCGCGTCGCCTTCGGCCCCACGGCGGTCGCCTGCACCTTCCGCGGGGAGCACCTG
Seq C2 exon
GACATGTGCCAGGCTCTCTCCTGCCACACAGACCCCCTGGACCCAAGCAGCTGTAGCCGCCTGCTTATTCCTCTCCTGGATGGGACAGAGTGTGGCGTGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'8-12,'8-10,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(23.6=100)
A:
PF0142114=Reprolysin=PD(5.3=20.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGCCTGGAGCACGAT
R:
CCACACTCTGTCCCATCCAGG
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]