RnoEX6016058 @ rn6
Exon Skipping
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5535236-5537235:+
Coord C1 exon
chr3:5535236-5535382
Coord A exon
chr3:5535795-5535957
Coord C2 exon
chr3:5537131-5537235
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCTGATCTGTCATAGCAC
3' ss Score
6.13
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTTTGGGCTGGACCATGATGGTGCTCCAGGCAGTGGCAGCACCTGCGAGGCCCGTGGCCATGTGATGGCATCTGACGGCGCAGTGCCTGCTGGAGGGGCCCTGGAGTGGTCCACCTGCAGCCAAAGGCAGCTGCAGCACCTGCTCAG
Seq A exon
CACAGGGCAAATGCACTGCCTCTGGGACCCGCCCGGGCTGCAGTCAGGACTCACATGGCACCAGCTGGTGGCACAGCCTGGCCTCTTCTACAGTGCAGATGACCAGTGCCGTGTGGCTTTCGGCGCCGGGGCTGTCGCCTGCACCTTCTCCAGGGAGGGTCTG
Seq C2 exon
GATGTATGCCAGGCTCTGTCCTGTCACACAGACCCCCTGGACCAAAGCAGCTGCAGCCGCCTCCTTGTTCCTCTCCTGGACGGGACAGAATGTGGTGTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780-'9-9,'9-7,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(23.4=100)
A:
PF0142114=Reprolysin=PD(5.3=20.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGGCTGGACCATGATGG
R:
ACCACATTCTGTCCCGTCCAG
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]