DreEX6051431 @ danRer10
Exon Skipping
Gene
ENSDARG00000076270 | adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:ZFIN;Acc:ZDB-GENE-070814-7]
Coordinates
chr8:45260031-45264352:-
Coord C1 exon
chr8:45264218-45264352
Coord A exon
chr8:45263757-45263907
Coord C2 exon
chr8:45260031-45260135
Length
151 bp
Sequences
Splice sites
3' ss Seq
GTTCGTTCTCTGCTATGTAGAGC
3' ss Score
5.35
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TTTTGGGATAAATCATGATGGAATAGATAACACATGCAGCTCTAGTGGCTTTATGATGGCATCTGATGGAGGTTATAACAGCGTCGATCTCACCTGGTCCCAATGCAGCAGGGCTCAGCTCTACAGCTTCTTCAG
Seq A exon
AGCTGGTAAGGCAGAGTGTGTTCAGGATGTGCCAGTGTTGGGTGGTTCAGTGCAGGACTGGAGGCCTGGTCTTTTCTATGGAGTGGACGATCAGTGCCGTATAGCGTTTGGCAGCTCAGCAACTGCTTGCTCTTTCACTAATGAAGACATG
Seq C2 exon
ACAACTTGCCGTGTTCTGTCCTGCCATATTAACCCTCAGGATCATAGCTCATGCACTCGTCTTCTTGTGCCACTCCTGGATGGAACAGAGTGTGGGCCCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076270-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(21.4=100)
A:
PF0142114=Reprolysin=PD(5.3=21.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGGAATAGATAACACATGCAGC
R:
CTGACTGGGCCCACACTCT
Band lengths:
226-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]