MmuEX6099812 @ mm9
Exon Skipping
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26836589-26838648:+
Coord C1 exon
chr2:26836589-26836735
Coord A exon
chr2:26837183-26837345
Coord C2 exon
chr2:26838544-26838648
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCTGATCTGTCACAGCAC
3' ss Score
6.97
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTTCGGGCTGGACCATGATGGTGCTCCAGGTAGTGGCAGCACCTGCAAGGCCAGTGGCCACGTGATGGCGGCTGATGGCGCAACACCTACTGGAGGGACCCTGGAGTGGTCTGCCTGCAGCCAAAGGCAGTTGCAGCACCTACTCAG
Seq A exon
CACAGGGCAAATGCACTGCTTCCAGGACCCACCTGGGCTGCAGTCAGGACTTACACGGCACCAGCTGATGGCACAGCCTGGCCTCTACTACAGTGCAGATGATCAGTGCCGTGTGGCTTTCGGTTCTGGGGCTGTCGCCTGCACCTTCTCCAGGGAGGGTCTG
Seq C2 exon
GATGTATGCCAGGCCCTGTCCTGCCACACAGACCCCTTGGACCAAAGCAGCTGCAGCCGCCTCCTTGTTCCTCTCCTGGATGGGACAGAATGTGGTGTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(23.6=100)
A:
PF0142114=Reprolysin=PD(5.3=20.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGGCTGGACCATGATG
R:
TCCACACCACATTCTGTCCCA
Band lengths:
248-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: