GgaEX7009816 @ galGal4
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6910719-6912313:+
Coord C1 exon
chr17:6910719-6910853
Coord A exon
chr17:6911404-6911554
Coord C2 exon
chr17:6912209-6912313
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTATGTCTGTATCAGCAC
3' ss Score
7.15
5' ss Seq
GTTGTAGGT
5' ss Score
2.38
Exon sequences
Seq C1 exon
TCTTGGCATCCCCCATGATGGTGAGGGGAATCAGTGCAGCAGCAGTGGTTTCATCATGGGCTCAGCAGGAAACCGTAATAGTGTTGACCTCATCTGGTCACAGTGTAGCCGAGAAGAATTCTTGGCCTTTGTCAG
Seq A exon
CACAGGCCAAACAAACTGCTTAAATGACCTGCCGGACATGGACGGCAGCATCCCTGGATGGAAGCCTGGCTTGTACTATGGAGCAGATGAGCAATGTAAAATAGCCTTTGGGAGCGTTGCAACTGCGTGCACCTTTGCTGACAGCAATGTT
Seq C2 exon
GATATATGTAAAGTTCTCTCATGCCATGTACAACCAGGAGACAAATCCAGCTGTACTCGGCTTCTTGTTCCCCTCTTAGATGGTACTGAGTGTGGCGTCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028-'8-12,'8-10,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(21.8=100)
A:
PF0142114=Reprolysin=PD(5.3=21.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGGCATCCCCCATGATGG
R:
GACGCCACACTCAGTACCATC
Band lengths:
234-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]