BtaEX6047373 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004510 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr11:104598228-104601386:-
Coord C1 exon
chr11:104601248-104601386
Coord A exon
chr11:104599783-104599896
Coord C2 exon
chr11:104598228-104598375
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGTCTTTCTCCTGCCCGCAGGCT
3' ss Score
10.96
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATCAAGAAGGAGTGTCTGGCCTGCAGGGGGGCCGCGGCCGTGTTCGACATGTCCTACTTCGGGAAGTTCTTCCTGGTGGGCCCAGACGCCAGGAAGGCTGCCGACTGGCTCTTCTCCGCCGACGTCAGCCGGCCCCCAG
Seq A exon
GCTCCACAGTGTACACGTGCATGCTGAACCACCGCGGGGGCACAGAGAGCGACCTGACCGTGAGCCGCCTGGCCCCTGGCCCCCAGGCCTCCCCGCTGGCCCCCGCCTTTGAAG
Seq C2 exon
GCGACGGATACTACCTGGCTGTGGGTGGGGCCGCAGCCCAGCACAACTGGTCCCACATCAGGACCGTGCTGCAGGACCGGAAGTTCCGGTGCCAGCTCATCGACAGCTCCGAGGACCTGGGCCTGATCAGCGTCCAGGGCCCGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004510-'20-28,'20-26,23-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PU(14.4=70.2)
A:
PF0157116=GCV_T=FE(16.6=100)
C2:
PF0157116=GCV_T=FE(21.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAAGGAGTGTCTGGCCT
R:
TCCTCGGAGCTGTCGATGAG
Band lengths:
253-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]