GgaEX0003648 @ galGal3
Exon Skipping
Gene
ENSGALG00000002855 | F1NBJ7_CHICK
Description
NA
Coordinates
chr17:7705569-7709417:-
Coord C1 exon
chr17:7709279-7709417
Coord A exon
chr17:7708923-7709036
Coord C2 exon
chr17:7705569-7705716
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCAGCGTGTCCCTCCCGCAGGCA
3' ss Score
9.02
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATCAAGAAGGAATGCCTGACGTGCAGAAATGCCGTGGCTCTCTTCAACATGTCTTATTTTGGGAAGTTCTACCTGGTTGGCCCCGAAGCCACCAAAGCAGCCAACTGGCTGTTCAGTGCTGACGTGAGCAAAGCTCCAG
Seq A exon
GCAGCACCGTGTACACCTGCATGCTGAACAAGCGTGGCGGGGTGGAGAGCGACCTGACTGTCAGCAGGATCAGCCCCGGTGACCCCAGCTCTCCACTGGCCCCCGCCTTCCAAG
Seq C2 exon
GAGATGGATACTACCTGGCCATTGGTGGGGCCGTGGCTCAGCACAACTGGTCACACATCACTGCGGTGCTGCAGGACATGAAGCTACAGTGCAAACTCATTGACTGCTCAGAGGAGCTGGGCATGATGAGCCTGCAGGGCCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002855-'16-16,'16-15,17-16
Average complexity
S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PU(14.4=70.2)
A:
PF0157116=GCV_T=FE(16.6=100)
C2:
PF0157116=GCV_T=FE(21.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAATGCCGTGGCTCTCTT
R:
ATCATGCCCAGCTCCTCTGAG
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]