HsaEX0056226 @ hg19
Exon Skipping
Gene
ENSG00000123453 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:10536]
Coordinates
chr9:136536657-136568151:-
Coord C1 exon
chr9:136568038-136568151
Coord A exon
chr9:136559380-136559493
Coord C2 exon
chr9:136536657-136536819
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTCTCCCTCTCGCAGGCT
3' ss Score
12.66
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTCCTCGAGTACGACTACTACGGGGCTTACGGGAGCCGCGCGCACGAGGACTACGCCTACCGCAGGCTGCTGGCAGACGAGTACACCTTCGCCTTCCCGCCCCACCACGACACG
Seq A exon
GCTCCACCGTGTACACGTGCATGCTCAACCACCGTGGGGGCACCGAGAGTGACCTGACTGTCAGCCGCCTGGCACCCAGCCACCAGGCCTCCCCGCTGGCCCCCGCCTTTGAAG
Seq C2 exon
GTCCGAGCCATGCGGCTGTCCTTTGTGGGGGAGCTGGGCTGGGAGCTGCACATTCCAAAGGCGTCCTGCGTGCCTGTGTACCGGGCTGTGATGGCCGCGGGTGCCAAGCACGGCCTCATCAACGCAGGGTACCGCGCCATCGACTCCCTGAGCATTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123453_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0157116=GCV_T=FE(16.8=100)
C2:
PF0157116=GCV_T=FE(23.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTACGGGGCTTACGGGAG
R:
CAATGCTCAGGGAGTCGATGG
Band lengths:
257-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)