DreEX0064156 @ danRer10
Exon Skipping
Gene
ENSDARG00000058102 | sardh
Description
sarcosine dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-996]
Coordinates
chr10:10519309-10559725:+
Coord C1 exon
chr10:10519309-10519399
Coord A exon
chr10:10536318-10536431
Coord C2 exon
chr10:10559632-10559725
Length
114 bp
Sequences
Splice sites
3' ss Seq
GACTGTTGTGCATGTTTCAGGAT
3' ss Score
7.78
5' ss Seq
ATGGTAACC
5' ss Score
5.31
Exon sequences
Seq C1 exon
GTATGATGTTAGGGGGAGGATGTGGAAAAGAGCTGGCTCACTGGATCATTCACGGCCGTCCAGAGAAAGACATGTATGGATATGATATCAG
Seq A exon
GATCCACCGTCTACACCTGCATGTTAAACCAGAGGGGCGGAGTCGAGTCTGACCTCACTGTCAGTCGTCTGGAGCCAAGCCCCTCCCACCTCCCACTGACACCCGAATTTAATG
Seq C2 exon
TCGTGAGCTGCTGCAGGAGGTGCTGGATTCAGAGCTCAGCAATGAAGCATTTCCCTTCTCCACACACAGGATCGTGAGCGCCGCTGGACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058102_MULTIEX1-5/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.047
Domain overlap (PFAM):
C1:
PF0126619=DAO=PD(3.9=45.2)
A:
PF0157116=GCV_T=FE(16.6=100)
C2:
PF0157116=GCV_T=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTTAGGGGGAGGATGTGG
R:
GGCGCTCACGATCCTGTG
Band lengths:
170-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]