MmuEX0040992 @ mm10
Exon Skipping
Gene
ENSMUSG00000009614 | Sardh
Description
sarcosine dehydrogenase [Source:MGI Symbol;Acc:MGI:2183102]
Coordinates
chr2:27215038-27220781:-
Coord C1 exon
chr2:27220643-27220781
Coord A exon
chr2:27218798-27218911
Coord C2 exon
chr2:27215038-27215185
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATCTGGGTCCTTGTTGCCAGGCT
3' ss Score
4.98
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATCCAGAAGGAATGTCTGGCCTGCAGAGGGGCTGCTGCTGTGTTCAACATGTCTTACTTTGGGAAGTTCTACCTGCTCGGGGTGGACGCCAGGAAGGCTGCAGACTGGCTCTTCTCAGCAGATGTCAACCGACCCCCAG
Seq A exon
GCTCAACAGTGTACACATGCATGCTGAACCAACGGGGAGGCACTGAGAGCGACCTGACTGTTAGCCGATTGGCTCCTGGCACCCAGGCCAGTCCCCTGGTCCCTGCCTTTGAAG
Seq C2 exon
GGGATTGCTACTACCTGGCCGTGGGTGGGGCTGTGGCCCAACACAACTGGTCCCACATAAACACGGTGCTACAGGACCAGGAGTTCCGGTGCCAGCTTATGGATAGTTCTGAAGATCTGGGCATGCTCAGTATCCAGGGCCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009614_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PU(14.4=70.2)
A:
PF0157116=GCV_T=FE(16.6=100)
C2:
PF0157116=GCV_T=FE(21.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGCTGTGTTCAACATG
R:
TGGATACTGAGCATGCCCAGA
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types