GgaEX0003648 @ galGal4
Exon Skipping
Gene
ENSGALG00000002855 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr17:7032785-7034801:-
Coord C1 exon
chr17:7034663-7034801
Coord A exon
chr17:7034307-7034420
Coord C2 exon
chr17:7032785-7032932
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCAGCGTGTCCCTCCCGCAGGCA
3' ss Score
9.02
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATCAAGAAGGAATGCCTGACGTGCAGAAATGCCCTGGCTCTCTTCAACATGTCTTATTTTGGGAAGTTCTACCTGGTTGGCCCCGAAGCCACCAAAGCAGCCAACTGGCTGTTCAGTGCTGACGTGAGCAAAGCTCCAG
Seq A exon
GCAGCACCGTGTACACCTGCATGCTGAACAAGCGTGGCGGGGTGGAGAGCGACCTGACTGTCAGCAGGATCAGCCCCGGTGACCCCAGCTCTCCACTGGCCCCCGCCTTCCAAG
Seq C2 exon
GAGATGGATACTACCTGGCCATTGGTGGGGCCGTGGCTCAGCACAACTGGTCACACATCACTGCGGTGCTGCAGGACATGAAGCTACAGTGCAAACTCATTGACTGCTCAGAGGAGCTGGGCATGATGAGCCTGCAGGGCCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002855_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PU(14.4=70.2)
A:
PF0157116=GCV_T=FE(16.6=100)
C2:
PF0157116=GCV_T=FE(21.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCCTGGCTCTCTTCAAC
R:
CTCATCATGCCCAGCTCCTCT
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]