HsaEX0056227 @ hg19
Exon Skipping
Gene
ENSG00000123453 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:10536]
Coordinates
chr9:136550315-136559493:-
Coord C1 exon
chr9:136559380-136559493
Coord A exon
chr9:136555502-136555649
Coord C2 exon
chr9:136550315-136550408
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCCAGGTGCCTCTCTTCCAGGGG
3' ss Score
7.68
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTCCACCGTGTACACGTGCATGCTCAACCACCGTGGGGGCACCGAGAGTGACCTGACTGTCAGCCGCCTGGCACCCAGCCACCAGGCCTCCCCGCTGGCCCCCGCCTTTGAAG
Seq A exon
GGGACGGTTACTACCTGGCCATGGGCGGGGCCGTGGCCCAGCACAACTGGTCCCACATCACCACCGTGCTGCAGGACCAGAAGTCCCAGTGCCAGCTCATCGACAGCTCCGAGGACCTGGGTATGATCAGTATCCAGGGCCCAGCCAG
Seq C2 exon
CCGAGCCATTTTGCAGGAGGTGCTGGACGCAGACCTGAGCAACGAGGCCTTCCCGTTCTCCACCCACAAGCTACTGAGAGCCGCAGGGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123453_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(16.8=100)
A:
PF0157116=GCV_T=FE(21.7=100)
C2:
PF0157116=GCV_T=FE(13.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACACGTGCATGCTCAAC
R:
CCCTGCGGCTCTCAGTAGC
Band lengths:
194-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)