DreEX0064157 @ danRer10
Exon Skipping
Gene
ENSDARG00000058102 | sardh
Description
sarcosine dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-996]
Coordinates
chr10:10536318-10559725:+
Coord C1 exon
chr10:10536318-10536431
Coord A exon
chr10:10536598-10536745
Coord C2 exon
chr10:10559632-10559725
Length
148 bp
Sequences
Splice sites
3' ss Seq
ACTGTTTGTATGTGCTCAAGGTG
3' ss Score
5.41
5' ss Seq
GAGGTTAGC
5' ss Score
3.77
Exon sequences
Seq C1 exon
GATCCACCGTCTACACCTGCATGTTAAACCAGAGGGGCGGAGTCGAGTCTGACCTCACTGTCAGTCGTCTGGAGCCAAGCCCCTCCCACCTCCCACTGACACCCGAATTTAATG
Seq A exon
GTGATGCGTATTACCTGGCCATTGGAGGGGGTGTGGCGCAGCATAACTGGAGCCACATTCAATCTGTGCTGCAGGACCAGGGTTTCCGCTGCACACTAATAGACCACACTGAGGACATGGGCATGATCAGCATACAGGGACCCAAGAG
Seq C2 exon
TCGTGAGCTGCTGCAGGAGGTGCTGGATTCAGAGCTCAGCAATGAAGCATTTCCCTTCTCCACACACAGGATCGTGAGCGCCGCTGGACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058102_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.030 C2=0.047
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(16.6=100)
A:
PF0157116=GCV_T=FE(21.4=100)
C2:
PF0157116=GCV_T=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCACCGTCTACACCTGCA
R:
CGCTCACGATCCTGTGTGTG
Band lengths:
194-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]