RnoEX0078014 @ rn6
Exon Skipping
Gene
ENSRNOG00000006916 | Sardh
Description
sarcosine dehydrogenase [Source:RGD Symbol;Acc:621125]
Coordinates
chr3:5760869-5769897:-
Coord C1 exon
chr3:5769784-5769897
Coord A exon
chr3:5764890-5765037
Coord C2 exon
chr3:5760869-5760962
Length
148 bp
Sequences
Splice sites
3' ss Seq
ACCTGTTGCTTCTCCTCCAGGGG
3' ss Score
9.99
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTCCACGGTGTACACATGCATGCTGAACCAACGGGGAGGCACCGAGAGCGACCTGACTGTTAGCTGCCTGGCCCCTGGTGCCCAGGCCAGTCCCCTGGCCCCTGCCTTTGAAG
Seq A exon
GGGATGGCTACTACCTAGCCGTAGGTGGGGCTGTGGCCCAACATAACTGGTCCCACATAAACACGGTGCTGCAGGATCAGGAGTTCCGGTGCCAGCTTATGGATTGTTCTGAAGATCTGGGCATGCTCAGTATCCAGGGCCCAGCCAG
Seq C2 exon
CCGTGACATTCTCCAGGATGTGCTTGATGCTGACCTGAGCAATGAAGCCTTCCCCTTCTCCACCCACCAGCTGGTGAGAGCTGCTGGACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006916-'24-26,'24-25,25-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(16.6=100)
A:
PF0157116=GCV_T=FE(21.4=100)
C2:
PF0157116=GCV_T=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACGGTGTACACATGCATG
R:
TGTCCAGCAGCTCTCACCAG
Band lengths:
202-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]