HsaEX0056227 @ hg38
Exon Skipping
Gene
ENSG00000123453 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr9:133685193-133703029:-
Coord C1 exon
chr9:133702916-133703029
Coord A exon
chr9:133690380-133690527
Coord C2 exon
chr9:133685193-133685286
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCCAGGTGCCTCTCTTCCAGGGG
3' ss Score
7.68
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCCTCGAGTACGACTACTACGGGGCTTACGGGAGCCGCGCGCACGAGGACTACGCCTACCGCAGGCTGCTGGCAGACGAGTACACCTTCGCCTTCCCGCCCCACCACGACACG
Seq A exon
GGGACGGTTACTACCTGGCCATGGGCGGGGCCGTGGCCCAGCACAACTGGTCCCACATCACCACCGTGCTGCAGGACCAGAAGTCCCAGTGCCAGCTCATCGACAGCTCCGAGGACCTGGGTATGATCAGTATCCAGGGCCCAGCCAG
Seq C2 exon
CCGAGCCATTTTGCAGGAGGTGCTGGACGCAGACCTGAGCAACGAGGCCTTCCCGTTCTCCACCCACAAGCTACTGAGAGCCGCAGGGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123453_MULTIEX2-4/5=C1-5
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0157116=GCV_T=FE(21.7=100)
C2:
PF0157116=GCV_T=FE(13.7=100)
Main Skipping Isoform:
ENST00000371872fB25126
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCGAGTACGACTACTACGG
R:
CCCTGCGGCTCTCAGTAGC
Band lengths:
202-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development