GgaEX1050825 @ galGal4
Exon Skipping
Gene
ENSGALG00000002855 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr17:7032410-7034420:-
Coord C1 exon
chr17:7034307-7034420
Coord A exon
chr17:7032785-7032932
Coord C2 exon
chr17:7032410-7032503
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGGGGGGTGTCATTTTCCAGGAG
3' ss Score
6.85
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCAGCACCGTGTACACCTGCATGCTGAACAAGCGTGGCGGGGTGGAGAGCGACCTGACTGTCAGCAGGATCAGCCCCGGTGACCCCAGCTCTCCACTGGCCCCCGCCTTCCAAG
Seq A exon
GAGATGGATACTACCTGGCCATTGGTGGGGCCGTGGCTCAGCACAACTGGTCACACATCACTGCGGTGCTGCAGGACATGAAGCTACAGTGCAAACTCATTGACTGCTCAGAGGAGCTGGGCATGATGAGCCTGCAGGGCCCACTGAG
Seq C2 exon
CCGCACTGTGCTGCAAGAGCTGCTGGACACCGACCTCAGCAACGAGGCCTTCCCCTTCTCCACCCATAGGCTCGTGAAAGCTGCAGGATGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002855-'24-27,'24-23,25-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(16.6=100)
A:
PF0157116=GCV_T=FE(21.4=100)
C2:
PF0157116=GCV_T=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCGTGTACACCTGCATG
R:
GCATCCTGCAGCTTTCACGAG
Band lengths:
202-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]