MmuEX6099862 @ mm9
Exon Skipping
Gene
ENSMUSG00000009614 | Sardh
Description
sarcosine dehydrogenase [Source:MGI Symbol;Acc:MGI:2183102]
Coordinates
chr2:27066531-27076301:-
Coord C1 exon
chr2:27076163-27076301
Coord A exon
chr2:27070558-27070705
Coord C2 exon
chr2:27066531-27066624
Length
148 bp
Sequences
Splice sites
3' ss Seq
ACCTGTTGCTTCTCCTCCAGGGG
3' ss Score
9.99
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCCAGAAGGAATGTCTGGCCTGCAGAGGGGCTGCTGCTGTGTTCAACATGTCTTACTTTGGGAAGTTCTACCTGCTCGGGGTGGACGCCAGGAAGGCTGCAGACTGGCTCTTCTCAGCAGATGTCAACCGACCCCCAG
Seq A exon
GGGATTGCTACTACCTGGCCGTGGGTGGGGCTGTGGCCCAACACAACTGGTCCCACATAAACACGGTGCTACAGGACCAGGAGTTCCGGTGCCAGCTTATGGATAGTTCTGAAGATCTGGGCATGCTCAGTATCCAGGGCCCAGCCAG
Seq C2 exon
CCGTGACATCCTGCAGGATGTGCTTGATGCTGACCTGAGCAACGAGGCCTTCCCCTTCTCCACCCACCAGCTGGTGAGAGCCGCCGGGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009614-'22-24,'22-23,26-24=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=PU(14.4=70.2)
A:
PF0157116=GCV_T=FE(21.4=100)
C2:
PF0157116=GCV_T=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAATGTCTGGCCTGCAG
R:
GGTGGGTGGAGAAGGGGAAG
Band lengths:
202-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: