HsaEX0056228 @ hg19
Exon Skipping
Gene
ENSG00000123453 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:10536]
Coordinates
chr9:136536657-136568151:-
Coord C1 exon
chr9:136568038-136568151
Coord A exon
chr9:136550315-136550408
Coord C2 exon
chr9:136536657-136536819
Length
94 bp
Sequences
Splice sites
3' ss Seq
GACTTTGCTCTTGCCTGCAGCCG
3' ss Score
9.49
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GTCCTCGAGTACGACTACTACGGGGCTTACGGGAGCCGCGCGCACGAGGACTACGCCTACCGCAGGCTGCTGGCAGACGAGTACACCTTCGCCTTCCCGCCCCACCACGACACG
Seq A exon
CCGAGCCATTTTGCAGGAGGTGCTGGACGCAGACCTGAGCAACGAGGCCTTCCCGTTCTCCACCCACAAGCTACTGAGAGCCGCAGGGCACCTG
Seq C2 exon
GTCCGAGCCATGCGGCTGTCCTTTGTGGGGGAGCTGGGCTGGGAGCTGCACATTCCAAAGGCGTCCTGCGTGCCTGTGTACCGGGCTGTGATGGCCGCGGGTGCCAAGCACGGCCTCATCAACGCAGGGTACCGCGCCATCGACTCCCTGAGCATTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123453_MULTIEX1-4/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0157116=GCV_T=FE(13.7=100)
C2:
PF0157116=GCV_T=FE(23.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTACGACTACTACGGGGCT
R:
TTTGGAATGTGCAGCTCCCAG
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)