GgaEX7009834 @ galGal4
Exon Skipping
Gene
ENSGALG00000002855 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr17:7029378-7032932:-
Coord C1 exon
chr17:7032785-7032932
Coord A exon
chr17:7032410-7032503
Coord C2 exon
chr17:7029378-7029540
Length
94 bp
Sequences
Splice sites
3' ss Seq
GCTTTGCTGTTCCCCCACAGCCG
3' ss Score
9.61
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
Exon sequences
Seq C1 exon
GAGATGGATACTACCTGGCCATTGGTGGGGCCGTGGCTCAGCACAACTGGTCACACATCACTGCGGTGCTGCAGGACATGAAGCTACAGTGCAAACTCATTGACTGCTCAGAGGAGCTGGGCATGATGAGCCTGCAGGGCCCACTGAG
Seq A exon
CCGCACTGTGCTGCAAGAGCTGCTGGACACCGACCTCAGCAACGAGGCCTTCCCCTTCTCCACCCATAGGCTCGTGAAAGCTGCAGGATGCACG
Seq C2 exon
GTGCGTGCCATGAGGCTGTCCTTTGTCGGTGAGCTGGGCTGGGAGCTGCACGTGCCCCGGGAGGACTGTGTCAGGGTGTACCAGGCGGTGATGGAGGCGGGCGCCCGGCACGGCATCACCAACGCTGGCTACAGAGCCATCGACAGCCTCAGCATCGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002855-'25-29,'25-27,26-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(21.4=100)
A:
PF0157116=GCV_T=FE(13.5=100)
C2:
PF0157116=GCV_T=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTACCTGGCCATTGGTGGG
R:
CAGCTCACCGACAAAGGACAG
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]