BtaEX6047375 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004510 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr11:104582778-104598375:-
Coord C1 exon
chr11:104598228-104598375
Coord A exon
chr11:104594232-104594325
Coord C2 exon
chr11:104582778-104582940
Length
94 bp
Sequences
Splice sites
3' ss Seq
AGCCTTGTCCTTGCTCACAGCCG
3' ss Score
7.37
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GCGACGGATACTACCTGGCTGTGGGTGGGGCCGCAGCCCAGCACAACTGGTCCCACATCAGGACCGTGCTGCAGGACCGGAAGTTCCGGTGCCAGCTCATCGACAGCTCCGAGGACCTGGGCCTGATCAGCGTCCAGGGCCCGGCCAG
Seq A exon
CCGGGCCGTTCTCCAGGAGCTGCTGGAGGCCGACCTGAGCGACGACGCCTTTCCCTTCTCCACCCACAAGCTGGTGAGAGCCGCCGGGCACCTG
Seq C2 exon
GTCCGGGCTGTGAGGCTGTCCTTCGTGGGGGAGCTGGGCTGGGAGCTGCACGCCCCGAGGCCGTCCTGCCTGCCCGTGTACCAGGCCCTGATGACCGCGGGGGCCAAGCACGGCCTCGTCAATGCCGGCTACCGGGCCATCGACTCGCTGAGCATCGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004510-'24-36,'24-31,26-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(21.4=100)
A:
PF0157116=GCV_T=FE(13.5=100)
C2:
PF0157116=GCV_T=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACTACCTGGCTGTGGGT
R:
CACGAAGGACAGCCTCACAG
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]