RnoEX6016088 @ rn6
Exon Skipping
Gene
ENSRNOG00000006916 | Sardh
Description
sarcosine dehydrogenase [Source:RGD Symbol;Acc:621125]
Coordinates
chr3:5746047-5765037:-
Coord C1 exon
chr3:5764890-5765037
Coord A exon
chr3:5760869-5760962
Coord C2 exon
chr3:5746047-5746209
Length
94 bp
Sequences
Splice sites
3' ss Seq
GACCCTGTCCTTGTTCACAGCCG
3' ss Score
9.32
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GGGATGGCTACTACCTAGCCGTAGGTGGGGCTGTGGCCCAACATAACTGGTCCCACATAAACACGGTGCTGCAGGATCAGGAGTTCCGGTGCCAGCTTATGGATTGTTCTGAAGATCTGGGCATGCTCAGTATCCAGGGCCCAGCCAG
Seq A exon
CCGTGACATTCTCCAGGATGTGCTTGATGCTGACCTGAGCAATGAAGCCTTCCCCTTCTCCACCCACCAGCTGGTGAGAGCTGCTGGACACCTG
Seq C2 exon
GTCCGAGCCATCCGGCTATCCTTTGTCGGGGAGCTGGGATGGGAGCTGCATGTGCCCCAAGCGTCCTGCTTGCCTGTGTACCGGGCTGTGATGGCTGCAGGGGCGAAGCACGGCCTAGTCAATGCAGGCTACCGTGCCATCGACTCCCTGAGCATTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006916-'25-27,'25-26,29-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(21.4=100)
A:
PF0157116=GCV_T=FE(13.5=100)
C2:
PF0157116=GCV_T=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGCATGCTCAGTATCCA
R:
CGGTAGCCTGCATTGACTAGG
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]