MmuEX6099863 @ mm10
Exon Skipping
Gene
ENSMUSG00000009614 | Sardh
Description
sarcosine dehydrogenase [Source:MGI Symbol;Acc:MGI:2183102]
Coordinates
chr2:27197529-27215185:-
Coord C1 exon
chr2:27215038-27215185
Coord A exon
chr2:27211011-27211104
Coord C2 exon
chr2:27197529-27197691
Length
94 bp
Sequences
Splice sites
3' ss Seq
GACTCTGTTCTTGTTCACAGCCG
3' ss Score
8.9
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GGGATTGCTACTACCTGGCCGTGGGTGGGGCTGTGGCCCAACACAACTGGTCCCACATAAACACGGTGCTACAGGACCAGGAGTTCCGGTGCCAGCTTATGGATAGTTCTGAAGATCTGGGCATGCTCAGTATCCAGGGCCCAGCCAG
Seq A exon
CCGTGACATCCTGCAGGATGTGCTTGATGCTGACCTGAGCAACGAGGCCTTCCCCTTCTCCACCCACCAGCTGGTGAGAGCCGCCGGGCACCTG
Seq C2 exon
GTCCGGGCCATCAGGCTGTCCTTTGTCGGGGAGCTGGGATGGGAGCTGCATGTACCCCGGGCATCCTGCTTGCCAGTGTACCGGGCTGTGATGGCTGCAGGTGCGAGGCATGGCCTAGTCAACGCAGGCTACCGTGCCATCGACTCCCTGAGCATCGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009614-'39-36,'39-33,42-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(21.4=100)
A:
PF0157116=GCV_T=FE(13.5=100)
C2:
PF0157116=GCV_T=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCACATAAACACGGTGCT
R:
GGTACACTGGCAAGCAGGATG
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types