DreEX0064145 @ danRer10
Exon Skipping
Gene
ENSDARG00000058102 | sardh
Description
sarcosine dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-996]
Coordinates
chr10:10536598-10577676:+
Coord C1 exon
chr10:10536598-10536745
Coord A exon
chr10:10559632-10559725
Coord C2 exon
chr10:10577514-10577676
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTGATTTGTGTGTTGATAGTCG
3' ss Score
4.81
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGATGCGTATTACCTGGCCATTGGAGGGGGTGTGGCGCAGCATAACTGGAGCCACATTCAATCTGTGCTGCAGGACCAGGGTTTCCGCTGCACACTAATAGACCACACTGAGGACATGGGCATGATCAGCATACAGGGACCCAAGAG
Seq A exon
TCGTGAGCTGCTGCAGGAGGTGCTGGATTCAGAGCTCAGCAATGAAGCATTTCCCTTCTCCACACACAGGATCGTGAGCGCCGCTGGACACCAG
Seq C2 exon
GTGAGAGCCATGCGTCTGTCATTTGTGGGTGAAATGGGCTGGGAGCTTCACATCCCGAAAGAGTCCTGTCTGCCTGTCTACAACGCTGTCATGGCCGCGGGAGCTAAATATGGCATCTGTAATGCCGGCTACCGGGCCATTGACTCTTTGAGCATTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058102-'20-29,'20-27,21-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(21.4=100)
A:
PF0157116=GCV_T=FE(13.5=100)
C2:
PF0157116=GCV_T=FE(23.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACATGGGCATGATCAGC
R:
CGGTAGCCGGCATTACAGATG
Band lengths:
172-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]