BtaEX6047470 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038691 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr11:105581945-105582623:+
Coord C1 exon
chr11:105581945-105582014
Coord A exon
chr11:105582187-105582252
Coord C2 exon
chr11:105582451-105582623
Length
66 bp
Sequences
Splice sites
3' ss Seq
CACCCCCCCACCCCCTGCAGACA
3' ss Score
9.4
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGGGGACGATGGCCTCCTGAAGGGCTGGGACACCAGGATGCCCGACACTGCTGCCTTCAGCAGCCGCAG
Seq A exon
ACACTCCATGGGCGTGTGCAGCATCCAGAGCAGCCCCCACCGTGAGAACATCTTGGCCACGGGAAG
Seq C2 exon
CTACGACGAGCATGTTCTCCTCTGGGACACGCGGAGCCTGCGGCAGCCACTGGCGGATGTGCCCGTGCAGGGAGGGGTGTGGAGGCTCAAGTGGCACCCGTTCCAGCGCGACCTGCTCCTGGCGGCCTGCATGCACGGCGGCTTTAAGATCATCAACTACCAGATGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038691-'7-12,'7-11,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(11.1=16.7)
A:
PF0040027=WD40=FE(61.1=100)
C2:
PF0040027=WD40=PD(25.0=15.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACACTGCTGCCTTCAG
R:
GATCTTAAAGCCGCCGTGCAT
Band lengths:
179-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]