HsaEX0071397 @ hg19
Exon Skipping
Gene
ENSG00000148399 | WDR85
Description
WD repeat domain 85 [Source:HGNC Symbol;Acc:25199]
Coordinates
chr9:140458886-140459606:-
Coord C1 exon
chr9:140459537-140459606
Coord A exon
chr9:140459345-140459410
Coord C2 exon
chr9:140458886-140459058
Length
66 bp
Sequences
Splice sites
3' ss Seq
GAAGCCGCCTCTGCTTGCAGACA
3' ss Score
6.83
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGGGCGACGATGGCCTTCTGAGGGGCTGGGACACCAGGGTACCCGGCAAATTTCTCTTCACCAGCAAAAG
Seq A exon
ACACACCATGGGTGTGTGCAGCATCCAGAGCAGCCCTCATCGGGAGCACATCCTGGCCACGGGAAG
Seq C2 exon
CTATGATGAACACATCCTACTGTGGGACACACGAAACATGAAGCAGCCGTTGGCAGATACGCCTGTGCAGGGTGGGGTATGGAGAATCAAGTGGCACCCTTTCCACCACCACCTGCTCCTGGCCGCCTGCATGCACAGTGGCTTTAAGATCCTCAACTGCCAAAAGGCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148399_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(20.0=33.3)
A:
PF0040027=WD40=FE(55.0=100)
C2:
PF0040027=WD40=PD(22.5=15.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGCAAATTTCTCTTCACC
R:
TAAAGCCACTGTGCATGCAGG
Band lengths:
175-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)