RnoEX6015777 @ rn6
Exon Skipping
Gene
ENSRNOG00000008102 | Dph7
Description
diphthamide biosynthesis 7 [Source:RGD Symbol;Acc:1304868]
Coordinates
chr3:2176378-2177146:+
Coord C1 exon
chr3:2176378-2176447
Coord A exon
chr3:2176546-2176611
Coord C2 exon
chr3:2176974-2177146
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCCCTTTGCCTACAGACA
3' ss Score
10.11
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGGGAGATGACTGCCTTCTGAGAGGCTGGGACACTAGGATGCTGGGCAAGCCTGTCTTCACTAGCAAAAG
Seq A exon
ACACTCCATGGGCGTGTGCAGCATCCAGAGCAGCCCCCATCGGGAGCACATCCTGGCTACCGGAAG
Seq C2 exon
CTATGATGAGCATGTTCTGCTGTGGGACACTCGGAATGTAAGACAACCGTTGGCAGATGTGCCAGTGCAAGGAGGCGTGTGGCGGCTCAGGTGGCACCCGGTCCACCACCATCTACTCCTGGCGGCCTGCATGCACAACGGCTTCAAGATCCTCAACTGCCAGAAGGCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008102-'8-12,'8-8,9-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(20.0=33.3)
A:
PF0040027=WD40=FE(55.0=100)
C2:
PF0040027=WD40=PD(22.5=15.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGCCTGTCTTCACTAGC
R:
AGGATCTTGAAGCCGTTGTGC
Band lengths:
179-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]