GgaEX1020869 @ galGal4
Exon Skipping
Gene
ENSGALG00000008750 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr17:1577159-1578410:+
Coord C1 exon
chr17:1577159-1577231
Coord A exon
chr17:1577973-1578038
Coord C2 exon
chr17:1578238-1578410
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGTATATTGCTCTTTTGCAGACA
3' ss Score
9.66
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GAGGAGATGACAGCCTGCTGAAAGGCTGGGACACCAGATGCAATCCAGAGACTCCAGTGTTCACCAGCAGGAG
Seq A exon
ACACTCAATGGGTGTATGCAGCATTCAGTGTAGTCCCCACCGGGAGAACCTCCTGGCTACTGGCAG
Seq C2 exon
CTATGATGAGCATGTGCTGCTGTGGGACACCAGGAACATGAAGCAGCCGCTGGCAGACACCCATGTTGAAGGTGGAGTCTGGAGGTTGAAGTGGCACCCAACCTGTGATTTTGTGCTGTTAGCAGCCTGCATGCAGAGTGGATTCAAGATCCTTGACTGCCGTGGAAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008750_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(20.0=32.0)
A:
PF0040027=WD40=FE(55.0=100)
C2:
PF0040027=WD40=PD(22.5=15.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGATGACAGCCTGCTGAA
R:
GTGCCACTTCAACCTCCAGAC
Band lengths:
169-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]