MmuEX0052071 @ mm10
Exon Skipping
Gene
ENSMUSG00000026975 | Dph7
Description
diphthamine biosynethesis 7 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24968885-24969678:+
Coord C1 exon
chr2:24968885-24968954
Coord A exon
chr2:24969050-24969115
Coord C2 exon
chr2:24969506-24969678
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCCCTTTGCCTGCAGACA
3' ss Score
11.06
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGGGAGATGACTGCCTTCTGAGAGGCTGGGACACTAGGATGCTGGGCACACCTGTCTTCACTAGCAAAAG
Seq A exon
ACATTGCATGGGTGTGTGCAGCATCCAGAGCAGCCCCCATCAGGAGCATATACTGGCAACTGGAAG
Seq C2 exon
CTATGATGAGCATGTTCTGCTGTGGGACACTCGAAACATAAGACAGCCATTGGCGGATGTACCAGTGCAAGGAGGTGTGTGGAGGCTCAAGTGGCACCCAGTTCACCACCATCTACTCCTGGCGGCCTGCATGCACAATGGCTTCAAGATTCTCAACTGCCAGAAGGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975-'9-15,'9-12,12-15=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(20.0=33.3)
A:
PF0040027=WD40=FE(55.0=100)
C2:
PF0040027=WD40=PD(22.5=15.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGAGAGGCTGGGACACT
R:
GCCAGGAGTAGATGGTGGTGA
Band lengths:
179-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types