MmuEX0052071 @ mm9
Exon Skipping
Gene
ENSMUSG00000026975 | Wdr85
Description
WD repeat domain 85 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24824405-24825198:+
Coord C1 exon
chr2:24824405-24824474
Coord A exon
chr2:24824570-24824635
Coord C2 exon
chr2:24825026-24825198
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCCCTTTGCCTGCAGACA
3' ss Score
11.06
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGGGAGATGACTGCCTTCTGAGAGGCTGGGACACTAGGATGCTGGGCACACCTGTCTTCACTAGCAAAAG
Seq A exon
ACATTGCATGGGTGTGTGCAGCATCCAGAGCAGCCCCCATCAGGAGCATATACTGGCAACTGGAAG
Seq C2 exon
CTATGATGAGCATGTTCTGCTGTGGGACACTCGAAACATAAGACAGCCATTGGCGGATGTACCAGTGCAAGGAGGTGTGTGGAGGCTCAAGTGGCACCCAGTTCACCACCATCTACTCCTGGCGGCCTGCATGCACAATGGCTTCAAGATTCTCAACTGCCAGAAGGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(20.0=33.3)
A:
PF0040027=WD40=FE(55.0=100)
C2:
PF0040027=WD40=PD(22.5=15.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGAGAGGCTGGGACACT
R:
GCCAGGAGTAGATGGTGGTGA
Band lengths:
179-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: