BtaEX6047517 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021861 | COBRA1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E5S2]
Coordinates
chr11:105846321-105846944:-
Coord C1 exon
chr11:105846842-105846944
Coord A exon
chr11:105846601-105846696
Coord C2 exon
chr11:105846321-105846463
Length
96 bp
Sequences
Splice sites
3' ss Seq
AGGCCTGCATTTCCCTGCAGGAC
3' ss Score
8.82
5' ss Seq
ATGGTAACA
5' ss Score
4.87
Exon sequences
Seq C1 exon
GGACCTATCCATGATCCTGTGTGACCCCTTCGCCATCAACACCCTGTCTCTGAGCACCGTCAGGCACCTGCAGGAGCTGGTGGGCCAGGAGGTGCTACCCAGG
Seq A exon
GACAGCCCGGACCTCCTCCTGCTGCTCCGGCTGCTGGCGCTGGGCCAGGGTGCGTGGGACATGATCGACAGCCAGGTCTTCAAGGAGCCCAAGATG
Seq C2 exon
GAGGTGGAGCTGGTCACCAGGTTCCTGCCCATGCTCATGTCCTTCGTGGTGGACGACCACACCTTCAACGTGGATCAGAAGCTCCCAGCCGAGGAGAAGGCCCCGGTCACGTACCCAAACACGCTGCCGGAGAGCTTCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021861-'7-13,'7-10,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(7.2=100)
A:
PF062098=COBRA1=FE(6.5=100)
C2:
PF062098=COBRA1=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGATCCTGTGTGACCCC
R:
CACGTTGAAGGTGTGGTCGTC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]